JBIL Publication List

Feile et al (2024) Immunocompetent Intestine-on-Chip Model for Analyzing Gut Mucosal Immune Responses. J. Vis. Exp. (207), e66603, doi:10.3791/66603 

Roth et al (2024) Quantification of Polystyrene Uptake by Different Cell Lines Using Fluorescence Microscopy and Label-Free Visualization of Intracellular Polystyrene Particles by Raman Microspectroscopic Imaging. Cells 13:454. https://doi.org/10.3390/cells13050454

Mandal et al (2024) Findaureus: An open-source application for locating Staphylococcus aureus in fluorescence-labelled infected bone tissue slices. PLoS One 19:e0296854. https://doi.org/10.1371/journal.pone.0296854

Eberhardt et al (2024).The effects of photoactivated ciprofloxacin and bile acids on biofilms on bile duct catheters. Int. J. Antimicrob. Agents 63: 107086. https://doi.org/10.1016/j.ijantimicag.2024.107086

Mandal et al. (2023) Insights into S. aureus-induced bone deformation in a mouse model of chronic osteomyelitis using fluorescence and Raman imaging. Int J Mol Sci 5;24(11):9762.doi: 10.3390/ijms24119762

Aubrechtova Dragounova et al. (2023) Identification of bacteria in mixed infection from urinary tract of patient’s samples using Raman analysis of dried droplets. Analyst 148(16):3806-3816.doi: 10.1039/d3an00679d

Guliev et al. (2023) High-throughput Raman spectroscopy allows ex vivo characterization of murine small intestinal intra-epithelial lymphocytes (IEL). Analyst 148(9):1978-1990.doi: 10.1039/d3an00074e

Dahms et al. (2022) Raman spectroscopic differentiation of Streptococcus pneumoniae from other Streptococci using laboratory strains and clinical isolates. Front. Cell. Infect. Microbiol. 12:930011. doi: 10.3389/fcimb.2022.930011

Herrmann et al. (2022) High-resolution MRI of the human palatine tonsil and its schematic anatomic 3D reconstruction. J Anat. 240(1):166-171. doi: 10.1111/joa.13532. .

Arolt et al. (2022) Mutually exclusive expression of COL11A1 by CAFs and tumour cells in a large panCancer and a salivary gland carcinoma cohort Head Neck Pathol. 16(2):394-406. doi: 10.1007/s12105-021-01370-0.

Wolber et al. (2021) Trophoblast Cell Surface Antigen 2 (Trop-2) Protein is highly expressed in salivary gland carcinomas and represents a potential therapeutic target. Head Neck Pathol. 15(4):1147-1155.
doi: 10.1007/s12105-021-01325-5

Press et al. (2021) Targeted delivery of a phosphoinositide 3-kinase γ inhibitor to restore organ function in sepsis. EMBO Mol. Med. 13:e14436 doi: 10.15252/emmm.202114436.

Pistiki et al (2021) Biochemical Analysis of Leukocytes after In Vitro and In Vivo Activation with Bacterial and Fungal Pathogens Using Raman Spectroscopy. Int. J. Mo.l Sci. 22(19):10481. doi: 10.3390/ijms221910481

Ramoji et al (2021) Leukocyte Activation Profile Assessed by Raman Spectroscopy Helps Diagnosing Infection and Sepsis. Crit. Care Explor. 12;3(5):e0394. doi: 10.1097/CCE.0000000000000394

Tannert et al. (2021) Lysosome-targeting pH indicator based on peri-fused naphthalene monoimide with superior stability for long term live cell imaging. J. Mat. Chem. B 9(1):112-124. , doi: 10.1039/d0tb02208j

Chrabaszcz et al. (2020) Comparison of standard and HD FT-IR with multimodal CARS/TPEF/SHG/FLIMS imaging in the detection of the early stage of pulmonary metastasis of murine breast cancer. Analyst 21;145(14):4982-4990.doi: 10.1039/d0an00762e.

Jia et al. (2020) Biotinylated surfome profiling identifies potential biomarkers for diagnosis and therapy of Aspergillus fumigatus infection. mSphere5(4):e00535-20.doi: 10.1128/mSphere.00535-20

Arolt et al. (2020) Expression profiling of extracellular matrix genes reveals global and entity-specific characteristics in adenoid cystic, mucoepidermoid and salivary duct carcinomas. Cancers (Basel)12(9):2466. doi: 10.3390/cancers12092466

Samuel et al. (2020) A virtual “Werkstatt” for digitization in the sciences
Research Ideas and Outcomes
6: e54106 doi: 10.3897/rio.6.e54106

Ali et al. (2020) Predictive Modeling of Antibiotic Susceptibility in E. Coli Strains Using the U-Net Network and One-Class Classification. IEEE Access 8: 167711-167720.

Kiani et al. (2020) Towards Bacteria Counting in DI Water of Several Microliters or Growing Suspension Using Impedance Biochips. Biosensors (Basel). 10(8):E82.

Götz et al (2020) Automated and rapid identification of multidrug resistant Escherichia coli against the lead drugs of acylureidopenicillins, cephalosporins, and fluoroquinolones using specific Raman marker bands. J Biophotonics13(8):e202000149. doi: 10.1002/jbio.202000149.

von Eggeling et al. (2020) Microdissection—An Essential Prerequisite for Spatial Cancer Omics. Proteomics 20(17-18):e2000077.doi: 10.1002/pmic.202000077

Bottek et al. (2020) Spatial proteomics revealed a CX3CL1-dependent crosstalk between the urothelium and relocated macrophages through IL-6 during an acute bacterial infection in the urinary bladder. Mucosal Immunol. 13:702–714.

Ramoji et al. (2019) Raman Spectroscopy Follows Time-Dependent Changes in T Lymphocytes Isolated from Spleen of Endotoxemic Mice.  ImmunoHorizons 3 (2) 45-60.

Tannert at al. (2019) Phenotypic antibiotic susceptibility testing of pathogenic bacteria using photonic readout methods: recent achievements and impact. Appl Microbiol Biotechnol. 103(2):549-566.

Hoffmann et al. (2019) Identification of Proteomic Markers in Head and Neck Cancer Using MALDI-MS Imaging, LC-MS/MS, and Immunohistochemistry. Proteomics Clin Appl. 13(1):e1700173.

Rodner et al. (2019) Fully convolutional networks in multimodal nonlinear microscopy images for automated detection of head and neck carcinoma: Pilot study. Head Neck. 41(1):116-121.

Krafft et al. (2018) Perspectives, potentials and trends of ex vivo and in vivo optical molecular pathology. J Biophotonics.  11(1).

Tannert et al. (2018) Photonic monitoring of treatment during infection and sepsis: development of new detection strategies and potential clinical applications. Anal Bioanal Chem.  410(3):773-790.

Pilat et al. (2018) Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E. coli under Antibiotic Stress. Sensors (Basel)18(5).