{"id":206,"date":"2019-08-01T07:31:25","date_gmt":"2019-08-01T07:31:25","guid":{"rendered":"http:\/\/bil-jena.de\/?page_id=206"},"modified":"2025-02-19T14:33:13","modified_gmt":"2025-02-19T14:33:13","slug":"publications","status":"publish","type":"page","link":"https:\/\/bil-jena.de\/?page_id=206","title":{"rendered":"Publications"},"content":{"rendered":"\n
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JBIL Publication List<\/strong><\/p>\n

Mandal et al (2025) Qualitative comparison of decalcifiers for mouse bone cryosections for subsequent biophotonic analysis. Sci. Rep.<\/em> 15:1153. DOI: 10.1038\/s41598-024-84330-2<\/a><\/p>\n

Feile et al (2024) Immunocompetent Intestine-on-Chip Model for Analyzing Gut Mucosal Immune Responses. J. Vis. Exp.<\/em> (207), e66603, doi:10.3791\/66603\u00a0<\/p>\n

Roth et al (2024) Quantification of Polystyrene Uptake by Different Cell Lines Using Fluorescence Microscopy and Label-Free Visualization of Intracellular Polystyrene Particles by Raman Microspectroscopic Imaging. Cells<\/em> 13:454. https:\/\/doi.org\/10.3390\/cells13050454<\/a><\/p>\n

Hopp et al (2024) In-depth structure-function profiling of the complex formation between clotting factor VIII and heme. Thrombosis Research<\/em> 237: 184-195. https:\/\/doi.org\/10.1016\/j.thromres.2024.04.006<\/a><\/p>\n

Mandal et al (2024) Findaureus: An open-source application for locating Staphylococcus aureus in fluorescence-labelled infected bone tissue slices. PLoS One<\/em> 19:e0296854. https:\/\/doi.org\/10.1371\/journal.pone.0296854<\/a><\/p>\n

Eberhardt et al (2024).The effects of photoactivated ciprofloxacin and bile acids on biofilms on bile duct catheters. Int. J. Antimicrob. Agents 63: 107086.<\/a> https:\/\/doi.org\/10.1016\/j.ijantimicag.2024.107086<\/a><\/p>\n

Mandal et al. (2023) Insights into S. aureus<\/em>-induced bone deformation in a mouse model of chronic osteomyelitis using fluorescence and Raman imaging. Int J Mol Sci<\/em> 5;24(11):9762.doi: 10.3390\/ijms24119762<\/a><\/p>\n

Aubrechtova Dragounova et al. (2023) Identification of bacteria in mixed infection from urinary tract of patient’s samples using Raman analysis of dried droplets. Analyst<\/em> 148(16):3806-3816.doi: 10.1039\/d3an00679d<\/a><\/p>\n

Guliev et al. (2023) High-throughput Raman spectroscopy allows ex vivo characterization of murine small intestinal intra-epithelial lymphocytes (IEL). Analyst<\/em> 148(9):1978-1990.doi: 10.1039\/d3an00074e<\/a><\/p>\n

Dahms et al. (2022) Raman spectroscopic differentiation of Streptococcus pneumoniae<\/em> from other Streptococci using laboratory strains and clinical isolates. Front. Cell. Infect. Microbiol.<\/em> 12:930011.<\/span>\u00a0doi: 10.3389\/fcimb.2022.930011<\/span><\/a><\/p>\n

Herrmann et al. (2022) High-resolution MRI of the human palatine tonsil and its schematic anatomic 3D reconstruction. J Anat.<\/em> 240(1):166-171. doi: 10.1111\/joa.13532. <\/a>.<\/p>\n

Arolt et al. (2022) Mutually exclusive expression of COL11A1 by CAFs and tumour cells in a large panCancer and a salivary gland carcinoma cohort Head Neck Pathol. <\/em> 16(2):394-406. doi: 10.1007\/s12105-021-01370-0.<\/a><\/p>\n

Wolber et al. (2021) Trophoblast Cell Surface Antigen 2 (Trop-2) Protein is highly expressed in salivary gland carcinomas and represents a potential therapeutic target. Head Neck Pathol. <\/em> 15(4):1147-1155.
doi: 10.1007\/s12105-021-01325-5<\/a>.<\/p>\n

Press et al. (2021) Targeted delivery of a phosphoinositide 3-kinase \u03b3 inhibitor to restore organ function in sepsis. EMBO Mol. Med.<\/em> 13:e14436 doi: 10.15252\/emmm.202114436<\/a>.<\/p>\n

Pistiki et al (2021) Biochemical Analysis of Leukocytes after In Vitro and In Vivo Activation with Bacterial and Fungal Pathogens Using Raman Spectroscopy. Int. J. Mo.l Sci<\/em>.<\/em> 22(19):10481. doi: 10.3390\/ijms221910481<\/a><\/p>\n

Ramoji et al (2021) Leukocyte Activation Profile Assessed by Raman Spectroscopy Helps Diagnosing Infection and Sepsis. Crit. Care Explor. <\/em>12;3(5):e0394. doi: 10.1097\/CCE.0000000000000394<\/a><\/p>\n

Tannert et al. (2021) Lysosome-targeting pH indicator based on peri-fused naphthalene monoimide with superior stability for long term live cell imaging. J. Mat. Chem. B<\/em> 9(1):112-124. , doi: 10.1039\/d0tb02208j<\/a><\/p>\n

Chrabaszcz et al. (2020) Comparison of standard and HD FT-IR with multimodal CARS\/TPEF\/SHG\/FLIMS imaging in the detection of the early stage of pulmonary metastasis of murine breast cancer. Analyst <\/em>21;145(14):4982-4990.doi: 10.1039\/d0an00762e.<\/a><\/p>\n

Jia et al. (2020) Biotinylated surfome profiling identifies potential biomarkers for diagnosis and therapy of Aspergillus fumigatus<\/em> infection. mSphere<\/em>5(4):e00535-20.doi: 10.1128\/mSphere.00535-20<\/a><\/p>\n

Arolt et al. (2020) Expression profiling of extracellular matrix genes reveals global and entity-specific characteristics in adenoid cystic, mucoepidermoid and salivary duct carcinomas. Cancers (Basel)<\/em>12(9):2466. doi: 10.3390\/cancers12092466<\/a><\/p>\n

Samuel et al. (2020) A virtual \u201cWerkstatt\u201d for digitization in the sciences
Research Ideas and Outcomes<\/em>6: e54106 doi: 10.3897\/rio.6.e54106<\/a><\/p>\n

Ali et al. (2020) Predictive Modeling of Antibiotic Susceptibility in E. Coli Strains Using the U-Net Network and One-Class Classification. IEEE Access<\/em> 8: 167711-167720.<\/a><\/p>\n

Kiani et al. (2020) Towards Bacteria Counting in DI Water of Several Microliters or Growing Suspension Using Impedance Biochips. Biosensors (Basel).<\/em> 10(8):E82.<\/a><\/p>\n

G\u00f6tz et al (2020) Automated and rapid identification of multidrug resistant Escherichia coli against the lead drugs of acylureidopenicillins, cephalosporins, and fluoroquinolones using specific Raman marker bands. J Biophotonics<\/em>13(8):e202000149. doi: 10.1002\/jbio.202000149<\/a>.<\/p>\n

von Eggeling et al. (2020) Microdissection\u2014An Essential Prerequisite for Spatial Cancer Omics. Proteomics<\/em> 20(17-18):e2000077.doi: 10.1002\/pmic.202000077<\/a><\/p>\n

Bottek et al. (2020) Spatial proteomics revealed a CX3CL1-dependent crosstalk between the urothelium and relocated macrophages through IL-6 during an acute bacterial infection in the urinary bladder. Mucosal Immunol. <\/em>13:702\u2013714.<\/a><\/p>\n

Ramoji et al. (2019) Raman Spectroscopy Follows Time-Dependent Changes in T Lymphocytes Isolated from Spleen of Endotoxemic Mice. \u00a0ImmunoHorizons<\/em> 3 (2) 45-60.<\/a><\/p>\n

Tannert at al. (2019) Phenotypic antibiotic susceptibility testing of pathogenic bacteria using photonic readout methods: recent achievements and impact. Appl Microbiol Biotechnol.<\/em> 103(2):549-566.<\/a><\/p>\n

Hoffmann et al. (2019) Identification of Proteomic Markers in Head and Neck Cancer Using MALDI-MS Imaging, LC-MS\/MS, and Immunohistochemistry. Proteomics Clin Appl<\/em>. 13(1):e1700173.<\/a><\/p>\n

Rodner et al. (2019) Fully convolutional networks in multimodal nonlinear microscopy images for automated detection of head and neck carcinoma: Pilot study. Head Neck.<\/em> 41(1):116-121.<\/a><\/p>\n

Krafft et al. (2018) Perspectives, potentials and trends of ex vivo and in vivo optical molecular pathology.<\/em> J Biophotonics.\u00a0 11(1).<\/a><\/p>\n

Tannert et al. (2018) Photonic monitoring of treatment during infection and sepsis: development of new detection strategies and potential clinical applications. Anal Bioanal Chem.<\/em>\u00a0 410(3):773-790.<\/a><\/p>\n

Pilat et al. (2018) Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E. coli<\/em> under Antibiotic Stress. Sensors (Basel)<\/em>18(5).<\/a><\/p>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n

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JBIL Publication List Mandal et al (2025) Qualitative comparison of decalcifiers for mouse bone cryosections for subsequent biophotonic analysis. Sci. Rep. 15:1153. DOI: 10.1038\/s41598-024-84330-2 Feile et al (2024) Immunocompetent Intestine-on-Chip Model for Analyzing Gut Mucosal Immune Responses. J. Vis. Exp. (207), e66603, doi:10.3791\/66603\u00a0 Roth et al (2024) Quantification of Polystyrene Uptake by Different Cell Lines […]<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-206","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/bil-jena.de\/index.php?rest_route=\/wp\/v2\/pages\/206","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/bil-jena.de\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/bil-jena.de\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/bil-jena.de\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/bil-jena.de\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=206"}],"version-history":[{"count":38,"href":"https:\/\/bil-jena.de\/index.php?rest_route=\/wp\/v2\/pages\/206\/revisions"}],"predecessor-version":[{"id":346,"href":"https:\/\/bil-jena.de\/index.php?rest_route=\/wp\/v2\/pages\/206\/revisions\/346"}],"wp:attachment":[{"href":"https:\/\/bil-jena.de\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=206"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}